Multivariate analysis of 3D ToF-SIMS images: method validation and application to cultured neuronal networks.

نویسندگان

  • S Van Nuffel
  • C Parmenter
  • D J Scurr
  • N A Russell
  • M Zelzer
چکیده

Advanced data analysis tools are crucial for the application of ToF-SIMS analysis to biological samples. Here, we demonstrate that by using a training set approach principal components analysis (PCA) can be performed on large 3D ToF-SIMS images of neuronal cell cultures. The method readily provides access to sample component information and significantly improves the images' signal-to-noise ratio (SNR).

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Towards practical time-of-flight secondary ion mass spectrometry lignocellulolytic enzyme assays

BACKGROUND Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) is a surface sensitive mass spectrometry technique with potential strengths as a method for detecting enzymatic activity on solid materials. In particular, ToF-SIMS has been applied to detect the enzymatic degradation of woody lignocellulose. Proof-of-principle experiments previously demonstrated the detection of both lignin-d...

متن کامل

Information from Complexity: Challenges of TOF-SIMS Data Interpretation

Time-of-flight secondary ion mass spectrometry (TOF-SIMS) data are complex, even for the simplest systems. Yet it is within this complexity that information about sample composition, molecular orientation, surface order, chemical bonding, sample purity, etc. is contained. The challenge is how to easily extract this information from the spectra and images. Multivariate analysis (MVA) has shown p...

متن کامل

Poisson and multinomial mixture models for multivariate SIMS image segmentation.

Multivariate statistical methods have been advocated for analysis of spectral images, such as those obtained with imaging time-of-flight secondary ion mass spectrometry (TOF-SIMS). TOF-SIMS images using total secondary ion counts or secondary ion counts at individual masses often fail to reveal all salient chemical patterns on the surface. Multivariate methods simultaneously analyze peak intens...

متن کامل

Imaging Analysis of Carbohydrate-Modified Surfaces Using ToF-SIMS and SPRi

Covalent modification of surfaces with carbohydrates (glycans) is a prerequisite for a variety of glycomics-based biomedical applications, including functional biomaterials, glycoarrays, and glycan-based biosensors. The chemistry of glycan immobilization plays an essential role in the bioavailability and function of the surface bound carbohydrate moiety. However, the scarcity of analytical meth...

متن کامل

Application of Shape Analysis on 3D Images - MRI of Renal Tumors

The image recognotion and the classification of objects according to the images are more in focus of interests, especially in medicine. A mathematical procedure allows us, not only to evaluate the amount of data per se, but also ensures that each image is pro- cessed similarly. Here in this study, we propose the power of shape analysis, in conjunction with neural networks for reducing white n...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • The Analyst

دوره 141 1  شماره 

صفحات  -

تاریخ انتشار 2016